Chaste: An Open Source C++ Library for Computational Physiology and Biology

Chaste: An Open Source C++ Library for Computational Physiology and Biology

Chaste - Cancer, Heart And Soft Tissue Environment - is an open source C++ library for the computational simulation of mathematical models developed for physiology and biology. Code development has been driven by two initial applications: cardiac electrophysiology and cancer development. A large number of cardiac electrophysiology studies have been enabled and performed, including high-performa...

Bioconductor: an open source framework for bioinformatics and computational biology.

This chapter describes the Bioconductor project and details of its open source facilities for analysis of microarray and other high-throughput biological experiments. Particular attention is paid to concepts of container and workflow design, connections of biological metadata to statistical analysis products, support for statistical quality assessment, and calibration of inference uncertainty m...

LEMON - an Open Source C++ Graph Template Library

The Scythe Statistical Library: An Open Source C++ Library for Statistical Computation

The Scythe Statistical Library is an open source C++ library for statistical computation. It includes a suite of matrix manipulation functions, a suite of pseudo-random number generators, and a suite of numerical optimization routines. Programs written using Scythe are generally much faster than those written in commonly used interpreted languages, such as R and MATLAB; and can be compiled on a...

An Open Forum for Computational Biology

I t is my pleasure to welcome you to PLoS Computational Biology. The International Society for Computational Biology (ISCB) is proud to be, with the Public Library of Science, the co-sponsor of this journal. We believe that PLoS Computational Biology will rapidly become a leading journal in the area of computational biology and, as an official journal of ISCB, will be an important venue in whic...